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Apple Pie Sourdough Cookie Cups

These apple pie sourdough cookie cups feature a tender fermented cookie base filled with homemade spiced apple pie filling, topped with crunchy crumble, and drizzled with easy microwave caramel. Perfect handheld fall dessert!
Course: Dessert
Cuisine: American
Author: Noelle Reed

Ingredients

Sourdough Cookie Base:

  • 120 g active sourdough starter 1/2 cup
  • 113 g unsalted butter, softened 1/2 cup or 8 tablespoons
  • 80 g powdered sugar 2/3 cup
  • 67 g brown sugar 1/3 cup, packed
  • 50 g egg 1 large egg
  • 5 g vanilla extract 1 teaspoon
  • 2.5 g almond extract 1/2 teaspoon, optional
  • 270 g all-purpose flour 2 1/4 cups, spooned and leveled
  • 2 g baking powder 1/2 teaspoon
  • 1.5 g salt 1/4 teaspoon
  • 0.6 g cream of tartar 1/8 teaspoon

Apple Pie Spiced Crumble:

  • 90 g all-purpose flour 3/4 cup, spooned and leveled
  • 60 g brown sugar 1/4 cup plus 1 tablespoon, packed
  • 23 g active sourdough starter 1 tablespoon plus 2 teaspoons
  • 45 g cold butter, cubed (3 tablespoons)
  • Scant 1/2 teaspoon salt
  • 4 g vanilla extract scant 1 teaspoon
  • 23 g powdered sugar 3 tablespoons
  • 3/4 teaspoon cinnamon
  • Scant 1/4 teaspoon nutmeg
  • Pinch of ground ginger

Apple Pie Filling:

  • 450 g Granny Smith or Honeycrisp apples peeled and diced into 1/4-inch pieces (about 4 medium apples or 4 cups diced)
  • 75 g brown sugar 1/3 cup plus 1 tablespoon, packed
  • 17 g cornstarch 3 tablespoons
  • 15 g fresh lemon juice 1 tablespoon
  • 2.5 g vanilla extract 1/2 teaspoon
  • 5 g ground cinnamon 1 teaspoon
  • 1 g nutmeg 1/4 teaspoon
  • 0.5 g ground ginger 1/8 teaspoon
  • 1.5 g salt 1/4 teaspoon
  • 15 g butter 1 tablespoon

Microwave Caramel:

  • 67 g granulated sugar 1/3 cup
  • 20 g water 1 tablespoon plus 1 teaspoon
  • 30 g heavy cream warmed (2 tablespoons)
  • 15 g unsalted butter room temperature (1 tablespoon)
  • 1 g salt 1/4 teaspoon
  • 2.5 g vanilla extract 1/2 teaspoon

Instructions

DAY 1 - PREPARE DOUGH AND CRUMBLE:

    Make Cookie Dough:

    • In a large bowl, cream together softened butter, powdered sugar, and brown sugar until light and fluffy, about 3-4 minutes with an electric mixer.
    • Add egg, vanilla extract, and almond extract (if using). Mix well until fully incorporated.
    • Add sourdough starter and mix until completely combined.
    • In a separate bowl, whisk together flour, baking powder, salt, and cream of tartar.
    • Gradually add dry ingredients to wet ingredients, mixing until just combined. Do not overmix.
    • Dump dough out onto plastic wrap, wrap well, and refrigerate for 8-24 hours.

    Make Fermented Crumble (Hand Method):

    • In a medium bowl, mix flour, brown sugar, salt, powdered sugar, cinnamon, nutmeg, ginger, and sourdough starter.
    • Add cold cubed butter and cut in using a pastry cutter or your fingers until mixture resembles coarse crumbs.
    • Add vanilla and mix gently to incorporate.
    • Cover and refrigerate alongside the cookie dough for 8-24 hours.

    Make Fermented Crumble (Food Processor Method - Preferred):

    • Add flour, brown sugar, salt, powdered sugar, cinnamon, nutmeg, ginger, and sourdough starter to food processor.
    • Pulse 3-4 times to combine dry ingredients.
    • Add cold cubed butter and pulse 10-15 times in short bursts until mixture resembles coarse crumbs.
    • Add vanilla and pulse 1-2 times just to incorporate.
    • Pulse until all ingredients combine until you have a brown sugar type texture to your crumble. You can squeeze it together and it will stay formed. Go slowly - you don’t want it to turn into a dough ball.
    • Cover and refrigerate alongside the cookie dough for 8-24 hours.

    DAY 2 - MAKE FILLING, ASSEMBLE, AND BAKE:

      Make Apple Pie Filling:

      • In a medium saucepan, combine diced apples, brown sugar, lemon juice, vanilla extract, cinnamon, nutmeg, ginger, and salt.
      • Add butter and cook over medium heat, stirring gently, for 5-8 minutes until apples begin to soften and release their juices.
      • In a small bowl, whisk cornstarch with 2 tablespoons of water to create a smooth slurry.
      • Add the cornstarch slurry to the apple mixture and stir gently to combine.
      • Continue cooking for 3-5 more minutes until apples are tender but still hold their shape and mixture thickens significantly. The filling should coat the back of a spoon.
      • Remove from heat and let cool completely, at least 45 minutes. For faster cooling, cover with plastic wrap and refrigerate until cold.

      Prepare for Assembly:

      • Preheat oven to 350°F (175°C).
      • Prepare a nonstick muffin pan. If your pan isn’t nonstick, lightly grease with butter or cooking spray or use a muffin liner.
      • Remove cookie dough and crumble from refrigerator. Let the dough sit at room temperature for 5-10 minutes if it’s very firm.

      Assemble Cookie Cups:

      • On a lightly floured surface, roll out the fermented cookie dough to approximately 3/8 inch thick.
      • Using a 2.5-3 inch circle cutter or wide mouth mason jar, cut out circles from the dough.
      • Gently place each cookie round into a muffin cup, pressing it up against the sides all the way to the top to form a cup shape. Make sure there are no gaps or thin spots.
      • Add a rounded tablespoon of cooled apple pie filling to the center of each cookie cup.
      • Gently push down the apple filling to create an even layer in the cookie cup.
      • Top with about 1 tablespoon of the crumble topping, sprinkling it evenly over the apple filling.

      Bake:

      • Bake at 350°F for 18-22 minutes, until edges are golden brown and crumble is lightly browned on top.
      • Leave cookie cups in the muffin pan for 10 minutes to set.
      • After 10 minutes, carefully remove from pan using a butter knife or offset spatula to gently lift them out.
      • Place on a wire rack to cool completely, at least 1 hour.

      Make Microwave Caramel:

      • Warm the heavy cream gently on the stovetop or in the microwave until hot but not boiling. Set aside and keep warm. Alternately heat in the microwave for 15-30 seconds.
      • Have your room temperature butter, salt, and vanilla extract measured and ready.
      • Add water to a large, clear microwave-safe bowl with high sides first.
      • Slowly pour the sugar into the center of the water. Do NOT stir.
      • Place bowl directly in the microwave on HIGH for 1 minute.
      • Continue microwaving in 30-second intervals until you’re past the 2-minute mark, checking after each interval.
      • Once past 2 minutes, switch to 15-second intervals and check carefully after each one.
      • Stop immediately when the mixture turns honey-gold in color, approximately 2-3 minutes total microwave time.
      • Using oven mitts, carefully remove the bowl from the microwave and place on a heat-safe surface.
      • Let it rest for about 1 minute without touching it. The caramel will darken to amber-brown from the residual heat.
      • Slowly whisk in the warm cream, about 1 tablespoon at a time. The mixture will bubble vigorously.
      • Once cream is fully incorporated, add the butter and whisk until completely melted and smooth.
      • Whisk in the salt and vanilla extract until smooth.
      • Let cool for a few minutes to thicken to drizzling consistency.

      Final Assembly:

      • Make sure your cookie cups are completely cool to the touch.
      • Using a spoon or piping bag, drizzle the caramel generously over each cookie cup.
      • If the caramel has cooled too much and thickened, gently reheat it in the microwave in 10-second bursts until it reaches drizzling consistency.
      • Allow the caramel to set for 10-15 minutes before serving.

      Notes

      Cookie cups must be completely cool before caramel drizzling or the caramel will be too thin and soak in.
      Apple filling must be cold before assembly to prevent soggy cookie cups.
      Don’t stir the sugar/water mixture when making caramel, this prevents crystallization.
      Fermentation time is flexible: 8 hours minimum, up to 48 hours for maximum flavor complexity.
      Press dough evenly up the sides of muffin cups with no thin spots to prevent breaking.
      Use a rounded tablespoon of apple filling, or until the pie filling is just about level with the muffin tin top edge. Too much will overflow during baking.
      Best apple varieties: Granny Smith (tart, holds shape), Honeycrisp (sweet, good texture), or a combination of both.
      Store at room temperature in an airtight container for up to 2 days. After 2 days, refrigerate for up to 5 days.
      Caramel can be made up to 1 week ahead and stored in the refrigerator. Reheat for 15-20 seconds before drizzling.
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