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Apple Pie Sourdough Cookies

Experience apple pie in handheld cookie form with these irresistible apple pie sourdough cookies! These easy apple pie cookies feature a fermented sourdough cookie base that develops complex flavors through 12-24 hour cold fermentation, creating the perfect vessel for homemade apple pie filling.
Prep Time45 minutes
Cook Time20 minutes
Fermentation12 hours
Course: Dessert
Cuisine: American
Keyword: apple dessert recipes, apple pie cookie recipe, apple pie cookies, apple pie crumble cookies, easy apple pie cookies, fall cookies, fermented cookie dough, homemade apple pie filling, sourdough baking, sourdough cookies
Author: Noelle Reed

Equipment

  • Large mixing bowl
  • Medium saucepan
  • Circle cutter (2.5-3 inches)/wide mouth jar
  • Rolling Pin
  • Baking sheet
  • Parchment paper
  • Pastry cutter optional
  • Heavy-bottomed saucepan
  • Food processor optional

Ingredients

Sourdough Cookie Base: (All cup measurements are approximate)

  • 120 grams active sourdough starter (1/2 cup)
  • 113 grams unsalted butter (softened)
  • 80 grams powdered sugar (2/3 cups)
  • 67 grams brown sugar (1/3 cup, packed)
  • 50 grams egg (1 large)
  • 5 grams vanilla extract (1 teaspoon)
  • 2.5 grams almond extract (1/2 teaspoon, optional)
  • 270 grams all-purpose flour (2 1/4 cups)
  • 2 grams baking powder (1/2 teaspoon)
  • 1.5 grams salt (1/4 teaspoon)
  • 0.6 grams cream of tartar (1/8 teaspoon)

Apple Pie Spiced Crumble Topping:

  • 120 grams all-purpose flour (1 cups)
  • 80 grams brown sugar (1/3 cup, packed)
  • 30 grams active sourdough starter (2 Tablespoons)
  • 60 grams cold butter (cubed)
  • 2.5 grams salt (1/2 teaspoon)
  • 5 grams vanilla extract (1 teaspoon)
  • 30 grams powdered sugar (1/4 cup)
  • 5 grams cinnamon (1 teaspoon)
  • 1 gram nutmeg (1/4 teaspoon)
  • 0.5 grams ground ginger (pinch)

Homemade Apple Pie Cookie Filling:

  • 450 grams Granny Smith or Honeycrisp apples (peeled and diced into 1/4-inch pieces)
  • 75 grams brown sugar (1/3 cup, packed)
  • 25 grams cornstarch (3 tablespoons)
  • 15 grams fresh lemon juice (1 tablespoon)
  • 2.5 grams vanilla extract (1/2 teaspoon)
  • 5 grams ground cinnamon (1 teaspoon)
  • 1 gram nutmeg (1/4 teaspoon)
  • 0.5 grams ground ginger (pinch)
  • 1.5 grams salt (pinch)
  • 15 grams butter (1 tablespoon)

Caramel Drizzle:

  • 67 grams granulated sugar (1/3 cup)
  • 15 grams water (1 tablespoon)
  • 30 grams heavy cream (2 tablespoons, warmed)
  • 15 grams unsalted butter (1 tablespoon)
  • 1 gram salt (pinch)
  • 2.5 grams vanilla extract (1/2 teaspoon)

Instructions

Day 1: Prepare Dough and Crumble for Fermentation

    Make the cookie dough:

    • In a large bowl, cream together softened butter, powdered sugar, and brown sugar until light and fluffy.
    • Add egg, vanilla extract, and almond extract (if using), mix well.
    • Add sourdough starter and mix until combined.
    • In a separate bowl, whisk together flour, baking powder, salt, and cream of tartar.
    • Gradually add dry ingredients to wet ingredients, mixing until just combined.
    • Dump out onto plastic wrap, wrap well and refrigerate for 8-24 hours.
    • Make the fermented crumble:
    • In a medium bowl, mix flour, brown sugar, salt, powdered sugar, cinnamon, nutmeg, ginger, and sourdough starter.
    • Add cold cubed butter and cut in using a pastry cutter or your fingers until mixture resembles coarse crumbs.
    • Add vanilla and mix gently.
    • Cover and refrigerate alongside the cookie dough for 8-24 hours.

    Day 2: Assembly and Baking

    • Prepare the apple pie filling:
    • In a medium saucepan, combine diced apples, brown sugar, lemon juice, vanilla extract, cinnamon, nutmeg, ginger, and salt.
    • Add butter and cook over medium heat, stirring gently, for 5-8 minutes until apples begin to soften and release their juices.
    • In a small bowl, whisk cornstarch with 2 tablespoons of water to create a slurry.
    • Add the cornstarch slurry slowly to the apple mixture and stir gently to combine.
    • Continue cooking for 3-5 more minutes until apples are tender but still hold their shape and mixture thickens significantly.
    • The filling should be glossy and coat the back of a spoon, with most liquid absorbed and no raw cornstarch taste.
    • Remove from heat and let cool completely (at least 45 minutes).
      Spiced apple pie filling on metal spoon showing texture and consistency

    Prepare for assembly:

    • Preheat oven to 350°F (175°C).
    • Line a large baking sheet with parchment paper.
    • Get your 2.5-3 inch circle cutter ready.

    Assemble the cookies:

    • Using your circle cutter as a guide, spread about 2 rounded tablespoons of fermented crumble mixture on the parchment in circles.
    • For more apple pie filling to show through the finished cookies, spread your crumble in an irregular fashion with slight holes and gaps throughout the circle.
    • Top each crumble circle with 1 rounded tablespoon of cooled apple pie filling, gently spread around the middle.
    • Roll out the fermented cookie dough on a floured surface to a rough rectangle, 12″x 9″, approximately 3/8″ inch thick.
    • Using your circle cutter, cut out circles from the dough.
    • Gently gather scraps, press together to form a ball and roll out another rectangle, and continue cutting until all dough is used.
    • Place each cookie circle on top of the crumble and apple layers.
    • Gently press down to adhere making sure the crumble and apple filling are under the cookie.
      Apple pie sourdough cookie assembly process showing crumble, filling, and dough layers

    Bake:

    • Bake for 18-22 minutes, until you can see dark golden browning on the crumble edges around the bottom.
    • Remove from oven and let cool completely on the baking sheet.

    Make the homemade caramel:

    • In a heavy-bottomed saucepan, combine sugar and water over medium heat.
    • Swirl the pan gently (don’t stir with a spoon) until sugar dissolves and mixture begins to bubble.
    • Once the sugar starts caramelizing, avoid stirring as this can cause crystallization. Gentle swirling keeps the mixture moving for even cooking.
    • Continue cooking without stirring for 8-12 minutes until the mixture turns a deep amber color.
    • Remove from heat immediately and carefully whisk in the warmed heavy cream (it will bubble vigorously).
    • Add butter, salt, and vanilla extract, whisking until smooth.
    • Let cool for 5-10 minutes until slightly thickened but still pourable.
      Homemade caramel sauce making process from clear syrup to amber caramel drizzle

    Add caramel drizzle:

    • While the caramel is still warm and pourable, use a spoon or piping bag to drizzle it over the cooled cookies.
    • If the caramel has cooled too much and thickened, gently reheat it over low heat until pourable again.
    • Allow to set for 30-45 minutes.

    Notes

    • Apple prep: Dice apples uniformly for even cooking. Granny Smith holds its shape well, while Honeycrisp adds natural sweetness.
    • Don’t overcook: Apples should be tender but still have some texture.
    • Gentle handling: Use a thin, flexible spatula to remove cookies from parchment to prevent breaking.
    • Complete cooling is crucial: Removing too early will cause the apple filling to move around and the cookies to fall apart.
    • Dough thickness matters: 3/8 inch thick ensures the cookie bakes through without being too thick or thin.
    • Fermentation time: 12-24 hours develops the best flavor in both the dough and crumble.
    • Assembly spacing: Leave about 2 inches between cookies on the baking sheet to allow for slight spreading.
     
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