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High-Protein Chocolate Chip Scones | Cottage Cheese Recipe

These healthier chocolate chip scones pack 9 to 12 grams of protein per scone (depending on size) thanks to cottage cheese and deliver all the flavor of a chocolate chip cookie with the tender, flaky texture of a bakery-style scone. Cold fermented overnight for incredible flavor depth and easy digestion, these scones are naturally lower in sugar and fat than traditional recipes while staying incredibly moist and satisfying. The cottage cheese completely disappears into the dough, leaving zero cottage cheese flavor but adding serious nutrition. Perfect for anyone looking to start the year with a breakfast that actually keeps them full until lunch without sacrificing taste.
Cook Time25 minutes
Course: Breakfast, Brunch, Snack
Cuisine: American, British Inspired
Keyword: chocolate chip scones, cold fermented scones, cottage cheese breakfast, cottage cheese scones, healthy chocolate chip scones, healthy scones, high protein breakfast, high protein scones, protein breakfast, sourdough scones
Calories: 320kcal
Author: Noelle Reed

Equipment

  • Blender or food processor
  • Large mixing bowl
  • medium mixing bowl
  • Box Grater
  • Whisk
  • Rubber spatula
  • Baking sheet
  • Parchment paper
  • Sharp knife or bench scraper
  • plastic wrap
  • Instant-read thermometer (optional but recommended)

Ingredients

WET INGREDIENTS (prepare first)

  • 200 grams cottage cheese about 3/4 cup, full fat, high protein, pureed optional (see notes)
  • 100 grams sourdough discard or active sourdough starter 1/3 cup plus 1 tablespoon, cold from refrigerator
  • 1 large egg cold
  • 5 grams vanilla extract 1 teaspoon

DRY INGREDIENTS

  • 300 grams all purpose flour 2 and 1/2 cups, spooned and leveled
  • 60 grams granulated sugar 1/3 cup
  • 10 grams baking powder 2 teaspoons
  • 3 grams baking soda 1/2 teaspoon
  • 3 grams salt 1/2 teaspoon

FAT

  • 56 grams unsalted butter 4 tablespoons or 1/2 stick, very cold, frozen for 15 minutes before grating

ADD-INS

  • 130 grams mini chocolate chips about 3/4 cup

OPTIONAL TOPPINGS

  • 30 grams heavy cream 2 tablespoons, for brushing
  • 15 grams turbinado sugar or coarse sugar 1 tablespoon, for sprinkling

Instructions

DAY 1 EVENING OR MORNING (mixing and shaping)

  • In a large mixing bowl, whisk together the flour, sugar, baking powder, baking soda, and salt until thoroughly combined.
  • Using a box grater, grate the cold butter (straight from the refrigerator) directly into the dry ingredients using the large holes of the grater. Toss the grated butter with the flour mixture using your hands or a fork until all the butter pieces are coated with flour.
  • Place the entire bowl with the flour and butter mixture into the freezer for 10 to 15 minutes.
  • While the bowl is in the freezer, prepare your wet ingredients using ONE of the two methods below:
  • METHOD 1 PUREED (guaranteed smooth, no cottage cheese visible): Add cottage cheese to blender or food processor. Blend for 30 to 60 seconds until completely smooth with no lumps remaining. Add the cold egg, sourdough starter, and vanilla extract to the blended cottage cheese. Pulse briefly for 10 to 20 seconds just until combined. Do not over-process the egg. Set aside.
  • METHOD 2 WHISKED (you will see cottage cheese chunks in the raw dough): In a medium bowl, whisk together the cottage cheese, cold egg, sourdough starter, and vanilla extract until combined. You WILL see visible cottage cheese chunks in the raw dough. With small curd brands like Nancy’s or Good Culture, these chunks melt completely during baking and disappear. With larger curd brands like Daisy or Organic Valley, some chunks may remain visible after baking. Set aside.
  • Remove the bowl from the freezer. Pour the wet ingredients (prepared by either method) over the cold flour and butter mixture. Using a rubber spatula, begin folding gently. When the dough is about halfway mixed together, add the mini chocolate chips and continue folding until a shaggy, wet looking dough forms. The dough will look very wet and clumpy. Do not add more flour. Resist the urge to overmix. If the dough feels too dry and is not coming together, you may add 1 tablespoon of heavy cream or milk at a time until it comes together.
  • Turn the dough onto a lightly floured surface. Pat the dough into a rough rectangle, then fold it in thirds like a letter. Rotate the dough 90 degrees and repeat. Continue this pat-and-fold process 4 to 6 times total. The dough will become more cohesive with each fold but will still look wetter than traditional scone dough.
  • Shape the dough into a ball, then pat or press into an 8 inch round disc about 1 inch thick.
  • My favorite shaping method: Line a round 8 inch cake pan with plastic wrap. Press the dough into the lined pan to form an even 8 inch disc about 1 inch thick.
    mixed scone dough ready in an 8 inch cake pan lined with plastic wrap.
  • Wrap the disc well in plastic wrap and place in the refrigerator for 8 to 14 hours to cold ferment. This develops complex sourdough flavor and improves digestibility.

DAY 2 MORNING OR AFTERNOON (cutting, freezing, and baking)

  • Remove the wrapped dough disc from the refrigerator and unwrap. Place on a cutting board.
  • Using a sharp knife, cut the disc in half, then cut each half in half again to create 4 wedges. For 8 smaller scones (9g protein each), cut each of those wedges in half to create 8 total wedges. For 6 larger scones (12g protein each), leave as 4 wedges then cut 2 of the wedges in half to create 6 total. Use straight up and down cuts without twisting the knife. A sharp knife is preferred over a bench scraper as it does not compress the sides.
    High protein chocolate chip cottage cheese scones arranged in a circle on a white marble board
  • Transfer the cut scones to a parchment lined tray or, arranging them close together but not touching. Wrap with plastic wrap or cover with a lid. Place the baking sheet in the freezer for a minimum of 30 minutes. One hour is preferred. This step is critical for preventing spread and creating flaky layers.
  • Alternatively, at this point you can freeze the cut scones solid (about 2 to 3 hours), then transfer to an airtight freezer bag and store for 3 to 4 weeks. Bake directly from frozen when ready.
  • When ready to bake, preheat the oven to 425 degrees Fahrenheit. Position the oven rack in the center position.
  • Optional: Brush the tops of the frozen scones with heavy cream and sprinkle with turbinado sugar for a bakery-style finish.
    Brushing unbaked chocolate chip cottage cheese scones with heavy cream using a silicone pastry brush
  • Place the scones on a parchment lined baking sheet.
  • Bake the scones directly from freezer (do not thaw). Bake at 425 degrees Fahrenheit for 5 minutes to set the exterior and prevent spreading.
  • After 5 minutes, reduce the oven temperature to 375 degrees Fahrenheit without opening the oven door. Continue baking for an additional 15 to 20 minutes for 8 smaller scones, or 18 to 23 minutes for 6 larger scones, until the scones are deeply golden brown on top and bottom and the internal temperature reaches 200 degrees Fahrenheit when tested with an instant read thermometer.
  • Remove from the oven and let cool on the baking sheet for 5 minutes before transferring to a wire rack. The scones will firm up as they cool slightly.
  • Serve warm or at room temperature. The scones are delicious plain or with butter. The chocolate chips will be melty if served warm.

ALTERNATIVE SINGLE-TEMPERATURE BAKING METHOD

  • If you prefer to use a single oven temperature instead of the two-temperature method, bake at 400 degrees Fahrenheit for 22 to 25 minutes for 8 smaller scones, or 25 to 28 minutes for 6 larger scones.
    This will result in slightly less dramatic rise and may increase spreading slightly, but will still produce excellent scones. The higher initial temperature of 425 degrees Fahrenheit sets the exterior faster and creates maximum rise, which is why it is the recommended method for high-hydration doughs.

Notes

COTTAGE CHEESE BRAND MATTERS
 
Not all cottage cheese is created equal. The brand you choose significantly impacts your final texture. Use high-protein cottage cheese that contains 13 to 14 grams of protein per half cup serving.
 
THICKER BRANDS (Good Culture, Nancy’s): These have less excess liquid and higher protein content. Simply pour off any pooled liquid on top before using. No draining required.
 
WETTER BRANDS (Daisy, Organic Valley): These contain more whey and less structural protein. You must drain them for 15 minutes in a fine-mesh strainer before using to remove excess liquid. After draining, you should have removed about 2 to 3 tablespoons of liquid. The cottage cheese should look thicker and more paste-like.
 
HOW TO TELL: Open the container and look. If there is visible liquid pooling on top or the curds look very loose and soupy, drain it. If the cottage cheese looks thick and holds together, just pour off any surface liquid.
 
PUREEING THE COTTAGE CHEESE IS OPTIONAL
 
You have two options for preparing the wet ingredients.
 
METHOD 1 PUREED: Blend cottage cheese alone until smooth, then pulse in the other wet ingredients. This guarantees no cottage cheese will be visible in the baked scones.
 
METHOD 2 WHISKED: Whisk all wet ingredients together by hand. You WILL see cottage cheese chunks in the raw dough. With small curd brands like Nancy’s or Good Culture, these chunks melt completely during baking and disappear from the finished scones.
 
I have made these scones multiple times with both Nancy’s and Good Culture without pureeing and had perfect results with zero cottage cheese visible after baking. With larger curd brands like Daisy or Organic Valley, chunks may remain visible after baking. Choose the method based on your cottage cheese brand and whether you mind seeing chunks in the unbaked dough.
 
 
COLD FERMENTATION BENEFITS
 
The 8 to 12 hour cold fermentation develops complex sourdough flavor that you cannot get from quick-mix scones. It also improves digestibility by breaking down some of the grain structure and relaxes the gluten for a more tender final texture. However, because this is a high-hydration dough, do not ferment longer than 12 hours or the dough structure may break down.
 
WHY FREEZE BEFORE BAKING
 
The 30 minute minimum freeze before baking (1 hour preferred) is critical for optimal results. Freezing serves three purposes: it firms up the butter so it creates steam pockets instead of melting into the dough, it relaxes the gluten for more tender scones, and it prevents spreading during baking. Scones baked without this step will spread more and will not rise as tall. King Arthur Baking’s testing showed visible improvement in rise and flakiness from freezing.
 
 
MINI CHOCOLATE CHIPS VS REGULAR
 
Mini chocolate chips are strongly recommended because they distribute more evenly throughout the dough and sink less in high moisture doughs. Every bite gets chocolate. If using regular chocolate chips, increase the amount to 150 to 170 grams to compensate for fewer chips per bite and expect slightly less even distribution throughout the scones.
 
 
CHECKING INTERNAL TEMPERATURE
 
The most reliable way to know your scones are fully baked is to check the internal temperature with an instant-read thermometer. Insert it into the center of the thickest scone. When it reads 200 degrees Fahrenheit, the scones are done. This prevents underbaking (doughy centers) and overbaking (dry scones).
 
NO SOURDOUGH STARTER OPTION
 
If you don’t have sourdough starter or discard, you can adapt this recipe. Replace the 100 grams of sourdough discard with 50 grams of buttermilk plus 50 grams of additional all purpose flour (bringing total flour to 350 grams). Increase the baking powder to 2 and a half teaspoons instead of 2 teaspoons. Keep the half teaspoon of baking soda as written since the buttermilk provides enough acidity to activate it.
 
If you don’t have buttermilk: Make your own by combining 50 grams (about 3 tablespoons plus 1 teaspoon) of whole milk with half teaspoon of white vinegar or lemon juice. Stir and let sit for 5 to 10 minutes until slightly thickened and curdled before using.
 
Without sourdough, you can skip the overnight fermentation and bake the same day, but refrigerate a few hours for easier handling. The scones will still be excellent but will lack the complex flavor from fermentation. Results may vary.
 
STORAGE AND REHEATING
 
Room temperature: Store baked scones in an airtight container at room temperature for up to 2 days. For the first 24 hours, you can store them under a clean kitchen towel instead of sealed, which helps maintain the crisp exterior.
 
Refrigerator: Scones keep in the fridge for up to 5 days in an airtight container.
 
Reheating: The best method is a 350 degree Fahrenheit oven for 5 to 7 minutes, which refreshes the texture. You can also microwave for 15 to 20 seconds or use an air fryer at 350 degrees Fahrenheit for about 3 minutes.
 
FREEZING UNBAKED SCONES
 
After shaping and cutting the scones on Day 1, you can freeze them for up to 3 to 4 weeks. Flash-freeze on the baking sheet until solid (about 2 hours), then transfer to an airtight freezer bag. Bake directly from frozen as directed, adding no additional time beyond the 30 minute freeze called for in the recipe. After 5 weeks in the freezer, rise and moisture decline noticeably.
 
FREEZING BAKED SCONES
 
Let scones cool completely, then store in a freezer-safe container for up to 3 months. To serve, thaw overnight in the refrigerator, then reheat in a 350 degree Fahrenheit oven for 5 to 7 minutes. Many bakers report that freezing actually enhances the sourdough flavor.
 
TROUBLESHOOTING
 
Dough is too wet and sticky: This is a higher hydration dough and may look wetter than traditional scone dough. The pat and fold technique helps bring it together. If absolutely unworkable, add flour 1 tablespoon at a time (maximum 2 tablespoons total) until manageable. However, try the cold and freeze approach first.
 
Scones spread during baking: This usually means your butter got too warm, you didn’t freeze the scones long enough before baking, or your oven temperature is too low. Make sure you freeze for the full 30 minutes and start at 425 degrees Fahrenheit to set the exterior quickly.
 
Scones are dry: You likely overbaked them. Check the internal temperature next time and remove from the oven as soon as they hit 200 degrees Fahrenheit. Also ensure you’re using high protein cottage cheese and that you didn’t add extra flour beyond what the recipe calls for.
 
NUTRITION INFORMATION
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Each scone contains approximately 9 grams of protein if cut into 8 scones, or 12 grams of protein if cut into 6 larger scones. The protein comes from the cottage cheese, egg, flour, and sourdough discard combined. The exact protein content will vary based on your specific cottage cheese brand. High protein brands like Good Culture will yield results at the higher end of the range.
 
WHY THIS RECIPE WORKS
 
This recipe uses cottage cheese to replace most of the butter and cream found in traditional scones, significantly boosting protein while reducing overall fat. The cottage cheese provides moisture through its liquid content and structure through its protein content. When blended smooth, it completely disappears into the dough flavor-wise but contributes to an exceptionally tender, moist crumb. The cold fermentation develops complex flavor and improves digestibility. The two temperature baking method (425 degrees Fahrenheit then 375 degrees Fahrenheit) sets the exterior quickly to prevent spreading while ensuring thorough baking. The mandatory freeze step keeps the butter cold so it creates steam pockets for flaky layers instead of melting into the dough.
 
MAKE AHEAD INSTRUCTIONS
 
This recipe is designed for make ahead convenience. Mix and shape the dough one evening, refrigerate overnight, then bake fresh the next morning. Alternatively, shape and freeze unbaked scones for up to 3 to 4 weeks, then bake directly from frozen whenever desired.
 
WHY 60 GRAMS OF SUGAR
 
This recipe uses 60 grams of sugar (about 7 and a half grams per scone) which is significantly less than traditional scones. This keeps these scones in the healthier breakfast category while still providing enough sweetness, especially combined with the chocolate chips. If you prefer sweeter scones, you can increase to 75 or 85 grams of sugar, but know that extra sugar will affect the texture slightly by attracting more moisture and potentially making the dough stickier.
 
 
 
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